%{!?python_sitelib: %define python_sitelib %(%{__python} -c "from distutils.sysconfig import get_python_lib; print get_python_lib()")}
%{!?python_sitearch: %define python_sitearch %(%{__python} -c "from distutils.sysconfig import get_python_lib; print get_python_lib(1)")}

Name:           ghmm
Version:        0.7
Release:        1.svn2251%{?dist}
Summary:        A library with data structures and algorithms for Hidden Markov Models
Group:          Development/Libraries
License:        LGPLv2+
URL:            http://ghmm.sourceforge.net/
# The source for this package was pulled from upstream's vcs. Use the
# following commands to generate the tarball: (pulled from r2251)
#   svn export https://ghmm.svn.sourceforge.net/svnroot/ghmm/trunk/ghmm ghmm
#   tar -cjf ghmm.tar.bz2 ghmm/
Source0:        ghmm.tar.bz2
BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)

BuildRequires:  gsl-devel
BuildRequires:  libtool
BuildRequires:  libxml2-devel
BuildRequires:  pkgconfig
BuildRequires:  python-devel
BuildRequires:  swig
Requires:       gsl
Requires:       tkinter


%description
The General Hidden Markov Model library (GHMM) is a freely available
LGPL-ed C library implementing efficient data structures and algorithms
for basic and extended HMMs.

It is developed by the Algorithmics group at the Max Planck Institute
for Molecular Genetics.

Features:
  * Discrete and continuous emissions
  * Mixtures of PDFs for continuous emissions
  * Non-homogenous Markov chains
  * Pair HMMs (contributed by Genoscope)
  * Clustering and mixture modelling for HMMs
  * Graphical Editor HMMEd
  * Python bindings
  * XML-based file format


%package        static
Summary:        Static libraries for %{name}
Group:          Development/Libraries
Requires:       %{name}-devel = %{version}-%{release}


%description    static
Static libraries for developing with %{name}.


%package        devel
Summary:        Development headers and libraries for %{name}
Group:          Development/Libraries
Requires:       %{name} = %{version}-%{release}


%description    devel
Headers and libraries for developing with %{name}.


%prep
%setup -q -n %{name}
sed -i \
  -e 's|$(PYTHON) setup.py build|CFLAGS="${RPM_OPT_FLAGS}" $(PYTHON) setup.py build|' \
  -e 's|$(PYTHON) setup.py install.*$|$(PYTHON) setup.py install -O1 --skip-build --root ${RPM_BUILD_ROOT}|' \
  ghmmwrapper/Makefile.am HMMEd/Makefile.am
sed -i -e '1,1d' \
  ghmmwrapper/ghmm_gato/{xmlutil,HMMEd,EditObjectAttributesDialog}.py \
  ghmmwrapper/ghmm.py HMMEd/{HMMEditor,ObjectHMM,HMMEditingContext}.py
find . -type f -name '*.c' | xargs chmod -x
find . -type f -name '*.h' | xargs chmod -x
find . -type f -name '*.txt' | xargs chmod -x


%build
# Docs aren't build because Fedora doesn't have doc++
./autogen.sh
%configure --enable-gsl --enable-experimental --enable-unsupported
make %{?_smp_mflags}


%install
rm -rf $RPM_BUILD_ROOT
make install DESTDIR=$RPM_BUILD_ROOT
rm -f $RPM_BUILD_ROOT%{_libdir}/*.la
pushd $RPM_BUILD_ROOT%{_bindir}
  for bin in cluster probdist scluster smix_hmm smo2xml; do
    mv ${bin} %{name}-${bin}
  done
popd


%check
# Commented out because it seems broken
#pushd ghmmwrapper
#  make check
#popd


%post -p /sbin/ldconfig


%postun -p /sbin/ldconfig


%clean
rm -rf $RPM_BUILD_ROOT


%files
%defattr(-,root,root,-)
%doc COPYRIGHT.txt LGPL.txt
%{python_sitearch}/*
%{python_sitelib}/*
%{_libdir}/lib%{name}.so.*
%{_bindir}/HMMEd
%{_bindir}/%{name}-*
%exclude %{_bindir}/%{name}-config
%{_datadir}/%{name}


%files static
%defattr(-,root,root,-)
%{_libdir}/lib%{name}.a


%files devel
%defattr(-,root,root,-)
%{_includedir}/ghmm
%{_libdir}/lib%{name}.so
%{_bindir}/%{name}-config


%changelog
* Sat Mar 21 2009 Conrad Meyer <konrad@tylerc.org> - 0.7-1.svn2251
- Initial package.